J4_6D9J_011
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAGCCAAAUGCCUCGUC*GACGCGCAUGAAUG
- Length
- 43 nucleotides
- Bulged bases
- 6D9J|1|5|A|3785, 6D9J|1|5|C|3791, 6D9J|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|C|3696
6D9J|1|5|U|3697
6D9J|1|5|G|3698
*
6D9J|1|5|C|3752
6D9J|1|5|G|3753
*
6D9J|1|5|C|3771
6D9J|1|5|U|3772
6D9J|1|5|U|3773
6D9J|1|5|A|3774
6D9J|1|5|A|3775
6D9J|1|5|G|3776
6D9J|1|5|G|3777
6D9J|1|5|U|3778
6D9J|1|5|A|3779
6D9J|1|5|G|3780
6D9J|1|5|C|3781
6D9J|1|5|C|3782
6D9J|1|5|A|3783
6D9J|1|5|A|3784
6D9J|1|5|A|3785
6D9J|1|5|U|3786
6D9J|1|5|G|3787
6D9J|1|5|C|3788
6D9J|1|5|C|3789
6D9J|1|5|U|3790
6D9J|1|5|C|3791
6D9J|1|5|G|3792
6D9J|1|5|U|3793
6D9J|1|5|C|3794
*
6D9J|1|5|G|3806
6D9J|1|5|A|3807
6D9J|1|5|C|3808
6D9J|1|5|G|3809
6D9J|1|5|C|3810
6D9J|1|5|G|3811
6D9J|1|5|C|3812
6D9J|1|5|A|3813
6D9J|1|5|U|3814
6D9J|1|5|G|3815
6D9J|1|5|A|3816
6D9J|1|5|A|3817
6D9J|1|5|U|3818
6D9J|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain n
- eL41
Coloring options: