J4_6D9J_012

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAGGC*GCUUG*CC*GGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|4231
6D9J|1|5|U|4232
6D9J|1|5|A|4233
6D9J|1|5|A|4234
6D9J|1|5|G|4235
6D9J|1|5|G|4236
6D9J|1|5|C|4237
*
6D9J|1|5|G|4287
6D9J|1|5|C|4288
6D9J|1|5|U|4289
6D9J|1|5|U|4290
6D9J|1|5|G|4291
*
6D9J|1|5|C|4318
6D9J|1|5|C|4319
*
6D9J|1|5|G|4328
6D9J|1|5|G|4329
6D9J|1|5|G|4330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain o

eL42