J4_6D9J_015
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCG*CGAGGGAGC*GUGCGCCGCGCU*GCGCACGGGG
- Length
- 34 nucleotides
- Bulged bases
- 6D9J|1|5|G|959, 6D9J|1|5|C|1280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|C|712
6D9J|1|5|C|713
6D9J|1|5|G|714
*
6D9J|1|5|C|954
6D9J|1|5|G|955
6D9J|1|5|A|956
6D9J|1|5|G|957
6D9J|1|5|G|958
6D9J|1|5|G|959
6D9J|1|5|A|960
6D9J|1|5|G|961
6D9J|1|5|C|962
*
6D9J|1|5|G|970
6D9J|1|5|U|971
6D9J|1|5|G|971|||A
6D9J|1|5|C|972
6D9J|1|5|G|973
6D9J|1|5|C|974
6D9J|1|5|C|975
6D9J|1|5|G|976
6D9J|1|5|C|977
6D9J|1|5|G|978
6D9J|1|5|C|979
6D9J|1|5|U|980
*
6D9J|1|5|G|1275
6D9J|1|5|C|1276
6D9J|1|5|G|1277
6D9J|1|5|C|1278
6D9J|1|5|A|1279
6D9J|1|5|C|1280
6D9J|1|5|G|1281
6D9J|1|5|G|1282
6D9J|1|5|G|1283
6D9J|1|5|G|1284
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain E
- eL6
- Chain F
- uL30
- Chain e
- eL32
- Chain f
- eL33
Coloring options: