J4_6DDD_001

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6DDD|1|1|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DDD_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1623

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6DDD|1|1|C|271
6DDD|1|1|C|272
*
6DDD|1|1|G|416
6DDD|1|1|A|417
6DDD|1|1|G|418
6DDD|1|1|U|419
6DDD|1|1|A|420
6DDD|1|1|C|421
*
6DDD|1|1|G|445
6DDD|1|1|G|446
6DDD|1|1|A|447
6DDD|1|1|A|448
6DDD|1|1|U|449
6DDD|1|1|C|450
6DDD|1|1|U|451
6DDD|1|1|G|452
*
6DDD|1|1|U|467
6DDD|1|1|A|468
6DDD|1|1|A|469
6DDD|1|1|G|470

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28