J4_6DDG_001

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6DDG|1|1|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DDG_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.156

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6DDG|1|1|C|271
6DDG|1|1|C|272
*
6DDG|1|1|G|416
6DDG|1|1|A|417
6DDG|1|1|G|418
6DDG|1|1|U|419
6DDG|1|1|A|420
6DDG|1|1|C|421
*
6DDG|1|1|G|445
6DDG|1|1|G|446
6DDG|1|1|A|447
6DDG|1|1|A|448
6DDG|1|1|U|449
6DDG|1|1|C|450
6DDG|1|1|U|451
6DDG|1|1|G|452
*
6DDG|1|1|U|467
6DDG|1|1|A|468
6DDG|1|1|A|469
6DDG|1|1|G|470

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28