J4_6DDG_010
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGC*GAC*GGACG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DDG_010 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.1971
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6DDG|1|1|G|2670
6DDG|1|1|A|2671
6DDG|1|1|G|2672
6DDG|1|1|C|2673
*
6DDG|1|1|G|2701
6DDG|1|1|A|2702
6DDG|1|1|C|2703
*
6DDG|1|1|G|2758
6DDG|1|1|G|2759
6DDG|1|1|A|2760
6DDG|1|1|C|2761
6DDG|1|1|G|2762
*
6DDG|1|1|C|2796
6DDG|1|1|C|2797
6DDG|1|1|C|2798
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L13
- Chain W
- 50S ribosomal protein L14
Coloring options: