J4_6DN2_001

3D structure

PDB id

6DN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.88 Å

Loop

Sequence

CGGGGCAG*CGACC*GAC*GGAUGAGAG

Length

25 nucleotides

Bulged bases

6DN2|1|Y|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70672.1

Basepair signature

cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6DN2|1|X|C|8
6DN2|1|X|G|9
6DN2|1|X|G|10
6DN2|1|X|G|11
6DN2|1|X|G|12
6DN2|1|X|C|13
6DN2|1|X|A|14
6DN2|1|X|G|15
*
6DN2|1|X|C|27
6DN2|1|X|G|28
6DN2|1|X|A|29
6DN2|1|X|C|30
6DN2|1|X|C|31
*
6DN2|1|Y|G|84
6DN2|1|Y|A|85
6DN2|1|Y|C|86
*
6DN2|1|Y|G|97
6DN2|1|Y|G|98
6DN2|1|Y|A|99
6DN2|1|Y|U|100
6DN2|1|Y|G|101
6DN2|1|Y|A|102
6DN2|1|Y|G|103
6DN2|1|Y|A|104
6DN2|1|Y|G|105

Current chains

Chain X

RNA RIBOSWITCH

Chain Y

RNA (56-MER)

Nearby chains