J4_6DNC_003
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6DNC|1|A|C|576, 6DNC|1|A|C|811, 6DNC|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DNC_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1153
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DNC|1|A|G|575
6DNC|1|A|C|576
6DNC|1|A|G|577
*
6DNC|1|A|C|764
6DNC|1|A|G|765
6DNC|1|A|A|766
6DNC|1|A|A|767
6DNC|1|A|A|768
6DNC|1|A|G|769
*
6DNC|1|A|C|810
6DNC|1|A|C|811
6DNC|1|A|G|812
6DNC|1|A|U|813
6DNC|1|A|A|814
6DNC|1|A|A|815
6DNC|1|A|A|816
6DNC|1|A|C|817
6DNC|1|A|G|818
6DNC|1|A|A|819
6DNC|1|A|U|820
6DNC|1|A|G|821
*
6DNC|1|A|C|879
6DNC|1|A|C|880
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 30S ribosomal protein S15
- Chain DB
- 30S ribosomal protein S17
- Chain HB
- 30S ribosomal protein S21
- Chain UA
- 30S ribosomal protein S8
- Chain YA
- 30S ribosomal protein S12
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