J4_6DNC_007

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6DNC|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DNC_007 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.105

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6DNC|1|B|G|1310
6DNC|1|B|G|1311
6DNC|1|B|U|1312
6DNC|1|B|U|1313
6DNC|1|B|C|1314
*
6DNC|1|B|G|1338
6DNC|1|B|G|1339
6DNC|1|B|U|1340
6DNC|1|B|G|1341
6DNC|1|B|A|1342
6DNC|1|B|G|1343
*
6DNC|1|B|C|1404
6DNC|1|B|U|1405
*
6DNC|1|B|A|1597
6DNC|1|B|A|1598
6DNC|1|B|U|1599
6DNC|1|B|C|1600
6DNC|1|B|G|1601
6DNC|1|B|U|1602
6DNC|1|B|A|1603
6DNC|1|B|C|1604

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain HA

50S ribosomal protein L34

Chain X

50S ribosomal protein L23