J4_6DNC_015
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6DNC|1|LA|U|8, 6DNC|1|LA|U|47, 6DNC|1|LA|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6DNC_015 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.1525
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6DNC|1|LA|G|7
6DNC|1|LA|U|8
6DNC|1|LA|G|9
6DNC|1|LA|G|10
*
6DNC|1|LA|C|25
6DNC|1|LA|G|26
6DNC|1|LA|U|27
*
6DNC|1|LA|A|43
6DNC|1|LA|A|44
6DNC|1|LA|G|45
6DNC|1|LA|G|46
6DNC|1|LA|U|47
6DNC|1|LA|C|48
6DNC|1|LA|G|49
*
6DNC|1|LA|C|65
6DNC|1|LA|C|66
Current chains
- Chain LA
- tRNA(fMet)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain MA
- Peptide chain release factor 1
- Chain Q
- 50S ribosomal protein L16
- Chain ZA
- 30S ribosomal protein S13
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