J4_6DZI_003

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

6DZI|1|A|G|1386, 6DZI|1|A|U|1389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZI_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.5583

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|C|1385
6DZI|1|A|G|1386
6DZI|1|A|A|1387
6DZI|1|A|U|1388
6DZI|1|A|U|1389
6DZI|1|A|A|1390
6DZI|1|A|G|1391
*
6DZI|1|A|C|1409
6DZI|1|A|C|1410
*
6DZI|1|A|G|1863
6DZI|1|A|U|1864
6DZI|1|A|A|1865
6DZI|1|A|C|1866
*
6DZI|1|A|G|2233
6DZI|1|A|G|2234

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32