J4_6DZI_007

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZI_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1023

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|G|1989
6DZI|1|A|A|1990
6DZI|1|A|C|1991
6DZI|1|A|U|1992
6DZI|1|A|G|1993
*
6DZI|1|A|C|2005
6DZI|1|A|A|2006
6DZI|1|A|C|2007
6DZI|1|A|A|2008
6DZI|1|A|G|2009
*
6DZI|1|A|U|2044
6DZI|1|A|G|2045
6DZI|1|A|A|2046
6DZI|1|A|C|2047
*
6DZI|1|A|G|2199
6DZI|1|A|U|2200
6DZI|1|A|A|2201
6DZI|1|A|A|2202
6DZI|1|A|C|2203

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain h

Small subunit ribosomal RNA; SSU rRNA

Chain j

CONSERVED PROTEIN DOMAIN