J4_6DZI_015

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

6DZI|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZI_015 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1227

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6DZI|1|A|U|1428
6DZI|1|A|C|1429
*
6DZI|1|A|G|1453
6DZI|1|A|G|1454
6DZI|1|A|U|1455
6DZI|1|A|G|1456
6DZI|1|A|A|1457
6DZI|1|A|G|1458
*
6DZI|1|A|C|1519
6DZI|1|A|C|1520
*
6DZI|1|A|G|1815
6DZI|1|A|C|1816
6DZI|1|A|C|1817
6DZI|1|A|C|1818
6DZI|1|A|G|1819
6DZI|1|A|U|1820
6DZI|1|A|A|1821

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain U

50S ribosomal protein L23