J4_6DZI_017

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZI_017 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2231

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6DZI|1|A|A|2867
6DZI|1|A|A|2868
6DZI|1|A|C|2869
6DZI|1|A|C|2870
*
6DZI|1|A|G|2898
6DZI|1|A|A|2899
6DZI|1|A|C|2900
*
6DZI|1|A|G|2955
6DZI|1|A|G|2956
6DZI|1|A|A|2957
6DZI|1|A|C|2958
6DZI|1|A|A|2959
*
6DZI|1|A|U|2993
6DZI|1|A|C|2994
6DZI|1|A|U|2995

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain L

50S ribosomal protein L14