J4_6DZP_003

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

6DZP|1|A|G|1386, 6DZP|1|A|U|1389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZP_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.5583

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6DZP|1|A|C|1385
6DZP|1|A|G|1386
6DZP|1|A|A|1387
6DZP|1|A|U|1388
6DZP|1|A|U|1389
6DZP|1|A|A|1390
6DZP|1|A|G|1391
*
6DZP|1|A|C|1409
6DZP|1|A|C|1410
*
6DZP|1|A|G|1863
6DZP|1|A|U|1864
6DZP|1|A|A|1865
6DZP|1|A|C|1866
*
6DZP|1|A|G|2233
6DZP|1|A|G|2234

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32