J4_6DZP_007

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DZP_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1023

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6DZP|1|A|G|1989
6DZP|1|A|A|1990
6DZP|1|A|C|1991
6DZP|1|A|U|1992
6DZP|1|A|G|1993
*
6DZP|1|A|C|2005
6DZP|1|A|A|2006
6DZP|1|A|C|2007
6DZP|1|A|A|2008
6DZP|1|A|G|2009
*
6DZP|1|A|U|2044
6DZP|1|A|G|2045
6DZP|1|A|A|2046
6DZP|1|A|C|2047
*
6DZP|1|A|G|2199
6DZP|1|A|U|2200
6DZP|1|A|A|2201
6DZP|1|A|A|2202
6DZP|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2