J4_6EK0_002

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6EK0|1|L5|A|218, 6EK0|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|C|196
6EK0|1|L5|A|197
6EK0|1|L5|A|198
6EK0|1|L5|G|199
*
6EK0|1|L5|C|215
6EK0|1|L5|C|216
6EK0|1|L5|C|217
6EK0|1|L5|A|218
6EK0|1|L5|G|219
6EK0|1|L5|C|220
6EK0|1|L5|C|221
6EK0|1|L5|C|222
*
6EK0|1|L5|G|226
6EK0|1|L5|A|227
6EK0|1|L5|C|228
*
6EK0|1|L5|G|240
6EK0|1|L5|G|241
6EK0|1|L5|U|242
6EK0|1|L5|A|243
6EK0|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26