J4_6EK0_003

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCC*GCGCG*CGGAGCG

Length

18 nucleotides

Bulged bases

6EK0|1|L5|G|1271, 6EK0|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|C|981
6EK0|1|L5|U|982
6EK0|1|L5|C|983
*
6EK0|1|L5|G|1070
6EK0|1|L5|C|1071
6EK0|1|L5|C|1072
*
6EK0|1|L5|G|1240
6EK0|1|L5|C|1241
6EK0|1|L5|G|1242
6EK0|1|L5|C|1243
6EK0|1|L5|G|1244
*
6EK0|1|L5|C|1267
6EK0|1|L5|G|1268
6EK0|1|L5|G|1269
6EK0|1|L5|A|1270
6EK0|1|L5|G|1271
6EK0|1|L5|C|1272
6EK0|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29