J4_6EK0_006

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6EK0|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|2618
6EK0|1|L5|G|2619
*
6EK0|1|L5|U|2637
6EK0|1|L5|G|2638
6EK0|1|L5|U|2639
6EK0|1|L5|G|2640
6EK0|1|L5|A|2641
6EK0|1|L5|A|2642
*
6EK0|1|L5|U|2692
6EK0|1|L5|G|2693
6EK0|1|L5|G|2694
6EK0|1|L5|A|2695
6EK0|1|L5|A|2696
6EK0|1|L5|A|2697
6EK0|1|L5|G|2698
*
6EK0|1|L5|U|2718
6EK0|1|L5|C|2719

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38