J4_6EM1_003
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6EM1_003 not in the Motif Atlas
- Homologous match to J4_8C3A_009
- Geometric discrepancy: 0.1625
- The information below is about J4_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EM1|1|1|U|3010
6EM1|1|1|A|3011
6EM1|1|1|A|3012
*
6EM1|1|1|U|3042
6EM1|1|1|C|3043
*
6EM1|1|1|G|3098
6EM1|1|1|C|3099
6EM1|1|1|U|3100
*
6EM1|1|1|A|3134
6EM1|1|1|U|3135
6EM1|1|1|G|3136
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
- Chain z
- UPF0642 protein YBL028C
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