J4_8C3A_009
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8C3A_009 not in the Motif Atlas
- Homologous match to J4_5TBW_009
- Geometric discrepancy: 0.084
- The information below is about J4_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_75971.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8C3A|1|1|U|2982
8C3A|1|1|A|2983
8C3A|1|1|A|2984
*
8C3A|1|1|U|3014
8C3A|1|1|C|3015
*
8C3A|1|1|G|3070
8C3A|1|1|C|3071
8C3A|1|1|U|3072
*
8C3A|1|1|A|3106
8C3A|1|1|U|3107
8C3A|1|1|G|3108
Current chains
- Chain 1
- 25S
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain k
- 60S ribosomal protein L3
- Chain w
- Ribosomal protein L13
Coloring options: