J4_6ENF_004

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6ENF|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ENF_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.107

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ENF|1|A|G|1310
6ENF|1|A|G|1311
6ENF|1|A|U|1312
6ENF|1|A|U|1313
6ENF|1|A|C|1314
*
6ENF|1|A|G|1338
6ENF|1|A|G|1339
6ENF|1|A|U|1340
6ENF|1|A|G|1341
6ENF|1|A|A|1342
6ENF|1|A|G|1343
*
6ENF|1|A|C|1404
6ENF|1|A|U|1405
*
6ENF|1|A|A|1597
6ENF|1|A|A|1598
6ENF|1|A|U|1599
6ENF|1|A|C|1600
6ENF|1|A|G|1601
6ENF|1|A|U|1602
6ENF|1|A|A|1603
6ENF|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23