3D structure

PDB id
6ENJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
6ENJ|1|A|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ENJ_016 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1929
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6ENJ|1|A|C|268
6ENJ|1|A|C|269
*
6ENJ|1|A|G|370
6ENJ|1|A|A|371
6ENJ|1|A|G|372
6ENJ|1|A|U|373
6ENJ|1|A|A|374
6ENJ|1|A|G|375
*
6ENJ|1|A|U|399
6ENJ|1|A|G|400
6ENJ|1|A|A|401
6ENJ|1|A|A|402
6ENJ|1|A|U|403
6ENJ|1|A|A|404
6ENJ|1|A|U|405
6ENJ|1|A|G|406
*
6ENJ|1|A|C|421
6ENJ|1|A|A|422
6ENJ|1|A|A|423
6ENJ|1|A|G|424

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain X
50S ribosomal protein L28

Coloring options:


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