J4_6ENJ_016

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6ENJ|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ENJ_016 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1929

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ENJ|1|A|C|268
6ENJ|1|A|C|269
*
6ENJ|1|A|G|370
6ENJ|1|A|A|371
6ENJ|1|A|G|372
6ENJ|1|A|U|373
6ENJ|1|A|A|374
6ENJ|1|A|G|375
*
6ENJ|1|A|U|399
6ENJ|1|A|G|400
6ENJ|1|A|A|401
6ENJ|1|A|A|402
6ENJ|1|A|U|403
6ENJ|1|A|A|404
6ENJ|1|A|U|405
6ENJ|1|A|G|406
*
6ENJ|1|A|C|421
6ENJ|1|A|A|422
6ENJ|1|A|A|423
6ENJ|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28