J4_6ENU_001

3D structure

PDB id

6ENU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6ENU|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ENU_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.14

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ENU|1|A|C|268
6ENU|1|A|C|269
*
6ENU|1|A|G|370
6ENU|1|A|A|371
6ENU|1|A|G|372
6ENU|1|A|U|373
6ENU|1|A|A|374
6ENU|1|A|G|375
*
6ENU|1|A|U|399
6ENU|1|A|G|400
6ENU|1|A|A|401
6ENU|1|A|A|402
6ENU|1|A|U|403
6ENU|1|A|A|404
6ENU|1|A|U|405
6ENU|1|A|G|406
*
6ENU|1|A|C|421
6ENU|1|A|A|422
6ENU|1|A|A|423
6ENU|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28