J4_6ENU_012

3D structure

PDB id

6ENU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6ENU|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ENU_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.189

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ENU|1|a|G|142
6ENU|1|a|A|143
6ENU|1|a|G|144
*
6ENU|1|a|C|178
6ENU|1|a|A|179
6ENU|1|a|U|180
6ENU|1|a|A|181
6ENU|1|a|A|182
6ENU|1|a|C|183
6ENU|1|a|G|184
*
6ENU|1|a|C|193
6ENU|1|a|C|194
6ENU|1|a|A|195
6ENU|1|a|A|196
6ENU|1|a|A|197
6ENU|1|a|G|198
*
6ENU|1|a|U|219
6ENU|1|a|G|220
6ENU|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20