J4_6ERI_014
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6ERI|1|BA|C|525, 6ERI|1|BA|A|764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ERI_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0985
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ERI|1|BA|G|524
6ERI|1|BA|C|525
6ERI|1|BA|G|526
*
6ERI|1|BA|C|713
6ERI|1|BA|G|714
6ERI|1|BA|A|715
6ERI|1|BA|A|716
6ERI|1|BA|A|717
6ERI|1|BA|G|718
*
6ERI|1|BA|C|759
6ERI|1|BA|C|760
6ERI|1|BA|G|761
6ERI|1|BA|U|762
6ERI|1|BA|A|763
6ERI|1|BA|A|764
6ERI|1|BA|A|765
6ERI|1|BA|C|766
6ERI|1|BA|G|767
6ERI|1|BA|A|768
6ERI|1|BA|U|769
6ERI|1|BA|G|770
*
6ERI|1|BA|C|829
6ERI|1|BA|C|830
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BH
- 30S ribosomal protein S8, chloroplastic
- Chain BL
- 30S ribosomal protein S12, chloroplastic
- Chain BO
- 30S ribosomal protein S15, chloroplastic
- Chain BQ
- 30S ribosomal protein S17, chloroplastic
- Chain BU
- 30S ribosomal protein S21, chloroplastic
Coloring options: