J4_6FEC_002
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUUAAAAAG*CGAAAG*CCAUAAACGAUG*UUC
- Length
- 30 nucleotides
- Bulged bases
- 6FEC|1|A|A|658, 6FEC|1|A|A|1079, 6FEC|1|A|C|1081, 6FEC|1|A|A|1083
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FEC|1|A|G|655
6FEC|1|A|U|656
6FEC|1|A|U|657
6FEC|1|A|A|658
6FEC|1|A|A|659
6FEC|1|A|A|660
6FEC|1|A|A|661
6FEC|1|A|A|662
6FEC|1|A|G|663
*
6FEC|1|A|C|1028
6FEC|1|A|G|1029
6FEC|1|A|A|1030
6FEC|1|A|A|1031
6FEC|1|A|A|1032
6FEC|1|A|G|1033
*
6FEC|1|A|C|1074
6FEC|1|A|C|1075
6FEC|1|A|A|1076
6FEC|1|A|U|1077
6FEC|1|A|A|1078
6FEC|1|A|A|1079
6FEC|1|A|A|1080
6FEC|1|A|C|1081
6FEC|1|A|G|1082
6FEC|1|A|A|1083
6FEC|1|A|U|1084
6FEC|1|A|G|1085
*
6FEC|1|A|U|1156
6FEC|1|A|U|1157
6FEC|1|A|C|1158
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain Q
- 40S ribosomal protein S23
- Chain Z
- 40S ribosomal protein S13
- Chain a
- 40S ribosomal protein S15a
- Chain c
- 40S ribosomal protein S2
- Chain j
- 40S ribosomal protein S14
- Chain k
- 40S ribosomal protein S26
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