J4_6FKR_001

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6FKR|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FKR_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0606

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6FKR|1|1A|C|268
6FKR|1|1A|U|269
*
6FKR|1|1A|G|370
6FKR|1|1A|A|371
6FKR|1|1A|G|372
6FKR|1|1A|U|373
6FKR|1|1A|A|374
6FKR|1|1A|C|375
*
6FKR|1|1A|G|399
6FKR|1|1A|G|400
6FKR|1|1A|A|401
6FKR|1|1A|A|402
6FKR|1|1A|U|403
6FKR|1|1A|C|404
6FKR|1|1A|U|405
6FKR|1|1A|G|406
*
6FKR|1|1A|U|421
6FKR|1|1A|A|422
6FKR|1|1A|A|423
6FKR|1|1A|G|424

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9