J4_6FKR_024

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6FKR|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FKR_024 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0809

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6FKR|1|2a|G|115
6FKR|1|2a|A|116
6FKR|1|2a|G|117
6FKR|1|2a|U|118
6FKR|1|2a|A|119
6FKR|1|2a|A|120
6FKR|1|2a|C|121
6FKR|1|2a|G|122
*
6FKR|1|2a|U|239
6FKR|1|2a|C|240
*
6FKR|1|2a|G|286
6FKR|1|2a|U|287
6FKR|1|2a|A|288
6FKR|1|2a|G|289
*
6FKR|1|2a|C|311
6FKR|1|2a|C|312

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17