J4_6FRK_011

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUAAG*UUGAU*ACC*GGGG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FRK|1|5|C|4230
6FRK|1|5|C|4231
6FRK|1|5|U|4232
6FRK|1|5|A|4233
6FRK|1|5|A|4234
6FRK|1|5|G|4235
*
6FRK|1|5|U|4289
6FRK|1|5|U|4290
6FRK|1|5|G|4291
6FRK|1|5|A|4292
6FRK|1|5|U|4293
*
6FRK|1|5|A|4317
6FRK|1|5|C|4318
6FRK|1|5|C|4319
*
6FRK|1|5|G|4328
6FRK|1|5|G|4329
6FRK|1|5|G|4330
6FRK|1|5|G|4331

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uL18

Chain T

Ribosomal protein eL21

Chain b

60S ribosomal protein L29

Chain o

Ribosomal protein eL42