J4_6FTG_009

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

6FTG|1|u|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|C|4231
6FTG|1|u|U|4232
6FTG|1|u|A|4233
6FTG|1|u|A|4234
6FTG|1|u|G|4235
*
6FTG|1|u|U|4289
6FTG|1|u|U|4290
6FTG|1|u|G|4291
*
6FTG|1|u|C|4318
6FTG|1|u|C|4319
*
6FTG|1|u|G|4328
6FTG|1|u|G|4329
6FTG|1|u|G|4330

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain o

eL42