J4_6FTI_002
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6FTI|1|u|C|309
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FTI_002 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1274
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6FTI|1|u|C|111
6FTI|1|u|C|112
*
6FTI|1|u|G|278
6FTI|1|u|A|279
6FTI|1|u|G|280
6FTI|1|u|U|281
6FTI|1|u|C|282
6FTI|1|u|G|283
*
6FTI|1|u|C|304
6FTI|1|u|A|305
6FTI|1|u|A|306
6FTI|1|u|A|307
6FTI|1|u|G|308
6FTI|1|u|C|309
6FTI|1|u|G|310
*
6FTI|1|u|U|327
6FTI|1|u|A|328
6FTI|1|u|A|329
6FTI|1|u|G|330
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain i
- 60S ribosomal protein L36
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