J4_6FTI_005

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6FTI|1|u|A|2366, 6FTI|1|u|U|2369, 6FTI|1|u|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTI|1|u|C|2365
6FTI|1|u|A|2366
6FTI|1|u|A|2367
6FTI|1|u|A|2368
6FTI|1|u|U|2369
6FTI|1|u|A|2370
6FTI|1|u|U|2371
*
6FTI|1|u|A|2389
6FTI|1|u|G|2390
6FTI|1|u|G|2391
*
6FTI|1|u|C|2824
6FTI|1|u|A|2825
6FTI|1|u|U|2826
6FTI|1|u|G|2827
6FTI|1|u|U|2828
6FTI|1|u|U|2829
*
6FTI|1|u|A|3856
6FTI|1|u|G|3857

Current chains

Chain u

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31