J4_6FTI_006
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6FTI|1|u|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FTI_006 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.093
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTI|1|u|G|2406
6FTI|1|u|G|2407
6FTI|1|u|U|2408
6FTI|1|u|U|2409
6FTI|1|u|C|2410
*
6FTI|1|u|G|2434
6FTI|1|u|G|2435
6FTI|1|u|U|2436
6FTI|1|u|C|2437
6FTI|1|u|A|2438
6FTI|1|u|G|2439
*
6FTI|1|u|U|2538
6FTI|1|u|C|2539
*
6FTI|1|u|G|2777
6FTI|1|u|G|2778
6FTI|1|u|C|2779
6FTI|1|u|C|2780
6FTI|1|u|G|2781
6FTI|1|u|U|2782
6FTI|1|u|A|2783
6FTI|1|u|C|2784
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain R
- eL19
- Chain X
- uL23
- Chain g
- eL34
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain k
- eL38
- Chain l
- eL39
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
Coloring options: