J4_6FTI_008
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FTI_008 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0913
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTI|1|u|G|3634
6FTI|1|u|A|3635
6FTI|1|u|C|3636
6FTI|1|u|U|3637
6FTI|1|u|G|3638
*
6FTI|1|u|C|3650
6FTI|1|u|A|3651
6FTI|1|u|A|3652
6FTI|1|u|A|3653
6FTI|1|u|G|3654
*
6FTI|1|u|U|3690
6FTI|1|u|G|3691
6FTI|1|u|A|3692
6FTI|1|u|U|3693
6FTI|1|u|U|3694
*
6FTI|1|u|A|3821
6FTI|1|u|U|3822
6FTI|1|u|G|3823
6FTI|1|u|A|3824
6FTI|1|u|A|3825
6FTI|1|u|C|3826
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain n
- 60s ribosomal protein l41
- Chain p
- Ribosomal protein L37a
Coloring options: