J4_6FTJ_007

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FTJ_007 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.0913

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTJ|1|u|G|3634
6FTJ|1|u|A|3635
6FTJ|1|u|C|3636
6FTJ|1|u|U|3637
6FTJ|1|u|G|3638
*
6FTJ|1|u|C|3650
6FTJ|1|u|A|3651
6FTJ|1|u|A|3652
6FTJ|1|u|A|3653
6FTJ|1|u|G|3654
*
6FTJ|1|u|U|3690
6FTJ|1|u|G|3691
6FTJ|1|u|A|3692
6FTJ|1|u|U|3693
6FTJ|1|u|U|3694
*
6FTJ|1|u|A|3821
6FTJ|1|u|U|3822
6FTJ|1|u|G|3823
6FTJ|1|u|A|3824
6FTJ|1|u|A|3825
6FTJ|1|u|C|3826

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2

Chain n

60s ribosomal protein l41

Chain p

Ribosomal protein L37a