J4_6FXC_007

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGC*GCG*CCUAAGGUAGC*GCACGAAAG

Length

27 nucleotides

Bulged bases

6FXC|1|AA|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|AA|C|1860
6FXC|1|AA|U|1861
6FXC|1|AA|G|1862
6FXC|1|AA|C|1863
*
6FXC|1|AA|G|1931
6FXC|1|AA|C|1932
6FXC|1|AA|G|1933
*
6FXC|1|AA|C|1951
6FXC|1|AA|C|1952
6FXC|1|AA|U|1953
6FXC|1|AA|A|1954
6FXC|1|AA|A|1955
6FXC|1|AA|G|1956
6FXC|1|AA|G|1957
6FXC|1|AA|U|1958
6FXC|1|AA|A|1959
6FXC|1|AA|G|1960
6FXC|1|AA|C|1961
*
6FXC|1|AA|G|1991
6FXC|1|AA|C|1992
6FXC|1|AA|A|1993
6FXC|1|AA|C|1994
6FXC|1|AA|G|1995
6FXC|1|AA|A|1996
6FXC|1|AA|A|1997
6FXC|1|AA|A|1998
6FXC|1|AA|G|1999

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA