J4_6FXC_013

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FXC_013 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0867

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6FXC|1|BA|C|340
6FXC|1|BA|G|341
6FXC|1|BA|A|342
6FXC|1|BA|A|343
6FXC|1|BA|U|344
*
6FXC|1|BA|A|359
6FXC|1|BA|A|360
6FXC|1|BA|U|361
6FXC|1|BA|C|362
*
6FXC|1|BA|G|366
6FXC|1|BA|A|367
6FXC|1|BA|A|368
*
6FXC|1|BA|U|380
6FXC|1|BA|G|381
6FXC|1|BA|U|382
6FXC|1|BA|A|383
6FXC|1|BA|G|384

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BS

50S ribosomal protein L24