J4_6FXC_014

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FXC_014 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4384

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6FXC|1|BA|C|644
6FXC|1|BA|A|645
6FXC|1|BA|A|646
6FXC|1|BA|G|647
*
6FXC|1|BA|C|669
6FXC|1|BA|G|670
6FXC|1|BA|U|671
6FXC|1|BA|A|672
6FXC|1|BA|G|673
*
6FXC|1|BA|C|680
6FXC|1|BA|G|681
6FXC|1|BA|A|682
6FXC|1|BA|G|683
*
6FXC|1|BA|C|695
6FXC|1|BA|G|696
6FXC|1|BA|U|697
6FXC|1|BA|U|698
6FXC|1|BA|U|699
6FXC|1|BA|A|700
6FXC|1|BA|G|701

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15