J4_6FYY_003
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6FYY|1|2|A|622, 6FYY|1|2|A|1025, 6FYY|1|2|C|1027, 6FYY|1|2|U|1028, 6FYY|1|2|A|1029, 6FYY|1|2|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FYY_003 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0825
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6FYY|1|2|A|621
6FYY|1|2|A|622
6FYY|1|2|G|623
*
6FYY|1|2|C|974
6FYY|1|2|G|975
6FYY|1|2|A|976
6FYY|1|2|A|977
6FYY|1|2|A|978
6FYY|1|2|G|979
*
6FYY|1|2|C|1020
6FYY|1|2|C|1021
6FYY|1|2|A|1022
6FYY|1|2|U|1023
6FYY|1|2|A|1024
6FYY|1|2|A|1025
6FYY|1|2|A|1026
6FYY|1|2|C|1027
6FYY|1|2|U|1028
6FYY|1|2|A|1029
6FYY|1|2|U|1030
6FYY|1|2|G|1031
*
6FYY|1|2|U|1102
6FYY|1|2|U|1103
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain O
- 40S ribosomal protein S14
- Chain W
- 40S ribosomal protein S22
- Chain X
- KLLA0B11231p
- Chain a
- 40S ribosomal protein S26
- Chain h
- 60S ribosomal protein L41-A
- Chain q
- eIF3c,Eukaryotic translation initiation factor 3 subunit C
Coloring options: