J4_6GAW_008
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6GAW|1|BA|U|966
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GAW_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1265
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
6GAW|1|BA|C|876
6GAW|1|BA|U|877
6GAW|1|BA|G|878
*
6GAW|1|BA|C|901
6GAW|1|BA|C|902
*
6GAW|1|BA|G|919
6GAW|1|BA|C|920
6GAW|1|BA|A|921
6GAW|1|BA|A|922
6GAW|1|BA|A|923
6GAW|1|BA|G|924
6GAW|1|BA|G|925
6GAW|1|BA|U|926
6GAW|1|BA|A|927
6GAW|1|BA|G|928
*
6GAW|1|BA|U|962
6GAW|1|BA|G|963
6GAW|1|BA|A|964
6GAW|1|BA|A|965
6GAW|1|BA|U|966
6GAW|1|BA|G|967
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- P-site fMet-tRNAMet, mitochondrial
- Chain An
- Aurora kinase A interacting protein 1
- Chain BC
- Translation initiation factor IF-2, mitochondrial
- Chain BD
- 39S ribosomal protein L2, mitochondrial
Coloring options: