J4_6GB2_002

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CU*AAAG*CAG

Length

13 nucleotides

Bulged bases

6GB2|1|BA|A|650, 6GB2|1|BA|A|783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|C|648
6GB2|1|BA|A|649
6GB2|1|BA|A|650
6GB2|1|BA|G|651
*
6GB2|1|BA|C|660
6GB2|1|BA|U|661
*
6GB2|1|BA|A|781
6GB2|1|BA|A|782
6GB2|1|BA|A|783
6GB2|1|BA|G|784
*
6GB2|1|BA|C|1003
6GB2|1|BA|A|1004
6GB2|1|BA|G|1005

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B5

Mitochondrial ribosomal protein L32

Chain BR

Mitochondrial ribosomal protein L17

Chain BW

Mitochondrial ribosomal protein L22

Chain Bw

mL65, MRPS30