J4_6GB2_003

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACGCUUACA*UAAUUAAC*GUUAACC*GAG

Length

28 nucleotides

Bulged bases

6GB2|1|BA|U|705, 6GB2|1|BA|A|707, 6GB2|1|BA|A|757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|C|669
6GB2|1|BA|A|670
6GB2|1|BA|C|671
6GB2|1|BA|G|672
6GB2|1|BA|C|673
6GB2|1|BA|U|674
6GB2|1|BA|U|675
6GB2|1|BA|A|676
6GB2|1|BA|C|677
6GB2|1|BA|A|678
*
6GB2|1|BA|U|701
6GB2|1|BA|A|702
6GB2|1|BA|A|703
6GB2|1|BA|U|704
6GB2|1|BA|U|705
6GB2|1|BA|A|706
6GB2|1|BA|A|707
6GB2|1|BA|C|708
*
6GB2|1|BA|G|753
6GB2|1|BA|U|754
6GB2|1|BA|U|755
6GB2|1|BA|A|756
6GB2|1|BA|A|757
6GB2|1|BA|C|758
6GB2|1|BA|C|759
*
6GB2|1|BA|G|768
6GB2|1|BA|A|769
6GB2|1|BA|G|770

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B2

Mitochondrial ribosomal protein L47

Chain B7

Mitochondrial ribosomal protein L34

Chain BX

Mitochondrial ribosomal protein L23

Chain Be

Mitochondrial ribosomal protein L41

Chain Bw

mL65, MRPS30