J4_6GB2_004

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUG*CAUCAC*GCAAUG*CCACAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|G|824
6GB2|1|BA|C|825
6GB2|1|BA|C|826
6GB2|1|BA|U|827
6GB2|1|BA|G|828
*
6GB2|1|BA|C|840
6GB2|1|BA|A|841
6GB2|1|BA|U|842
6GB2|1|BA|C|843
6GB2|1|BA|A|844
6GB2|1|BA|C|845
*
6GB2|1|BA|G|869
6GB2|1|BA|C|870
6GB2|1|BA|A|871
6GB2|1|BA|A|872
6GB2|1|BA|U|873
6GB2|1|BA|G|874
*
6GB2|1|BA|C|969
6GB2|1|BA|C|970
6GB2|1|BA|A|971
6GB2|1|BA|C|972
6GB2|1|BA|A|973
6GB2|1|BA|C|974

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2