J4_6GB2_007
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAG*CAA*UAGAUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 6GB2|1|BB|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GB2_007 not in the Motif Atlas
- Homologous match to J4_5HR7_002
- Geometric discrepancy: 0.4488
- The information below is about J4_5HR7_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6GB2|1|BB|G|7
6GB2|1|BB|U|8
6GB2|1|BB|A|9
6GB2|1|BB|G|10
*
6GB2|1|BB|C|26
6GB2|1|BB|A|27
6GB2|1|BB|A|28
*
6GB2|1|BB|U|44
6GB2|1|BB|A|45
6GB2|1|BB|G|46
6GB2|1|BB|A|47
6GB2|1|BB|U|48
6GB2|1|BB|G|49
*
6GB2|1|BB|C|62
6GB2|1|BB|C|63
Current chains
- Chain BB
- CP tRNAPhe, mitochondrial
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain BS
- Mitochondrial ribosomal protein L18
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bd
- Mitochondrial ribosomal protein L40
- Chain Bk
- Mitochondrial ribosomal protein L48
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