J4_6GC0_013

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*UU*ACGAG*UGAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC0_013 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.3169

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6GC0|1|A|G|1444
6GC0|1|A|G|1445
*
6GC0|1|A|U|1466
6GC0|1|A|U|1467
*
6GC0|1|A|A|1525
6GC0|1|A|C|1526
6GC0|1|A|G|1527
6GC0|1|A|A|1528
6GC0|1|A|G|1529
*
6GC0|1|A|U|1542
6GC0|1|A|G|1543
6GC0|1|A|A|1544
6GC0|1|A|A|1545
6GC0|1|A|G|1546
6GC0|1|A|C|1547

Current chains

Chain A

23S ribosomal RNA

Nearby chains