J4_6GC6_003

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GC6|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC6_003 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.3475

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GC6|1|A|C|268
6GC6|1|A|C|269
*
6GC6|1|A|G|370
6GC6|1|A|A|371
6GC6|1|A|G|372
6GC6|1|A|U|373
6GC6|1|A|A|374
6GC6|1|A|G|375
*
6GC6|1|A|U|399
6GC6|1|A|G|400
6GC6|1|A|A|401
6GC6|1|A|A|402
6GC6|1|A|U|403
6GC6|1|A|A|404
6GC6|1|A|U|405
6GC6|1|A|G|406
*
6GC6|1|A|C|421
6GC6|1|A|A|422
6GC6|1|A|A|423
6GC6|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains