J4_6GC8_001

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GC8|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1201

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GC8|1|A|C|268
6GC8|1|A|C|269
*
6GC8|1|A|G|370
6GC8|1|A|A|371
6GC8|1|A|G|372
6GC8|1|A|U|373
6GC8|1|A|A|374
6GC8|1|A|G|375
*
6GC8|1|A|U|399
6GC8|1|A|G|400
6GC8|1|A|A|401
6GC8|1|A|A|402
6GC8|1|A|U|403
6GC8|1|A|A|404
6GC8|1|A|U|405
6GC8|1|A|G|406
*
6GC8|1|A|C|421
6GC8|1|A|A|422
6GC8|1|A|A|423
6GC8|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28