J4_6GC8_013

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC8_013 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1201

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6GC8|1|A|G|2643
6GC8|1|A|G|2644
6GC8|1|A|G|2645
6GC8|1|A|C|2646
*
6GC8|1|A|G|2674
6GC8|1|A|A|2675
6GC8|1|A|C|2676
*
6GC8|1|A|G|2731
6GC8|1|A|G|2732
6GC8|1|A|A|2733
6GC8|1|A|A|2734
6GC8|1|A|G|2735
*
6GC8|1|A|U|2769
6GC8|1|A|G|2770
6GC8|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14