J4_6GQ1_012

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

6GQ1|1|AX|U|8, 6GQ1|1|AX|U|47, 6GQ1|1|AX|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GQ1_012 not in the Motif Atlas

Homologous match to J4_4WT8_031

Geometric discrepancy: 0.3045

The information below is about J4_4WT8_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.26

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6GQ1|1|AX|U|7
6GQ1|1|AX|U|8
6GQ1|1|AX|A|9
6GQ1|1|AX|G|10
*
6GQ1|1|AX|C|25
6GQ1|1|AX|G|26
6GQ1|1|AX|C|27
*
6GQ1|1|AX|G|43
6GQ1|1|AX|A|44
6GQ1|1|AX|G|45
6GQ1|1|AX|G|46
6GQ1|1|AX|U|47
6GQ1|1|AX|C|48
6GQ1|1|AX|C|49
*
6GQ1|1|AX|G|65
6GQ1|1|AX|A|66

Current chains

Chain AX

Transfer RNA - Phe

Nearby chains

Chain o

60S ribosomal protein L42-A